Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sarcosine oxidase subunit alpha | SAMN06295900_10522 | Not Available | Negative | 2431441 - 2434464 | 109364.0 |
| sarcosine oxidase subunit delta | SAMN06295900_10523 | Not Available | Negative | 2434461 - 2434784 | 12242.1 |
| sarcosine oxidase subunit beta | SAMN06295900_10524 | Not Available | Negative | 2434830 - 2436074 | 45248.7 |
| l-serine ammonia-lyase | SAMN06295900_10525 | Not Available | Negative | 2436145 - 2437593 | 51575.9 |
| transcriptional regulator, arac family with amidase-like domain | SAMN06295900_10526 | Not Available | Positive | 2437795 - 2438958 | 42665.4 |
| glycine betaine/proline transport system substrate-binding protein | SAMN06295900_10527 | Not Available | Negative | 2438985 - 2439953 | 34994.6 |
| transcriptional regulator, arac family with amidase-like domain | SAMN06295900_10528 | Not Available | Negative | 2440009 - 2441004 | 37120.9 |
| glycine betaine/proline transport system permease protein | SAMN06295900_10529 | Not Available | Negative | 2441020 - 2441925 | 32482.7 |
| glycine betaine/proline transport system atp-binding protein | SAMN06295900_10530 | Not Available | Negative | 2441918 - 2443090 | 42573.7 |
| conserved hypothetical protein | SAMN06295900_10531 | Not Available | Positive | 2443447 - 2444394 | 33365.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.