Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putrescine transport system permease protein | SAMN06295900_104404 | Not Available | Negative | 2356273 - 2357202 | 34516.1 |
| putrescine transport system atp-binding protein | SAMN06295900_104405 | Not Available | Negative | 2357199 - 2358275 | 39199.1 |
| putrescine transport system substrate-binding protein | SAMN06295900_104406 | Not Available | Negative | 2358592 - 2359713 | 41236.1 |
| putrescine aminotransferase | SAMN06295900_104407 | Not Available | Negative | 2359803 - 2361206 | 51400.4 |
| l-glutamine synthetase | SAMN06295900_104408 | Not Available | Negative | 2361244 - 2362578 | 49956.2 |
| gamma-glutamyl-gamma-aminobutyrate hydrolase | SAMN06295900_104409 | Not Available | Negative | 2362628 - 2363404 | 27430.7 |
| transcriptional regulator, xre family with cupin sensor | SAMN06295900_104410 | Not Available | Positive | 2364435 - 2364986 | 20505.6 |
| gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase | SAMN06295900_104411 | Not Available | Positive | 2365069 - 2366562 | 53014.5 |
| agmatinase | SAMN06295900_104412 | Not Available | Positive | 2366699 - 2367700 | 36309.1 |
| methyl-accepting chemotaxis protein | SAMN06295900_104413 | Not Available | Negative | 2367757 - 2368887 | 39440.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.