Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pterin-4-alpha-carbinolamine dehydratase | SAMN06295900_104394 | Not Available | Negative | 2344697 - 2345095 | 15032.8 |
| pqq-dependent dehydrogenase, methanol/ethanol family | SAMN06295900_104395 | Not Available | Positive | 2345616 - 2347466 | 66886.1 |
| cytochrome c oxidase, cbb3-type, subunit iii | SAMN06295900_104396 | Not Available | Positive | 2347638 - 2348060 | 15437.6 |
| amino acid abc transporter substrate-binding protein, paat family | SAMN06295900_104397 | Not Available | Positive | 2348093 - 2348998 | 33451.7 |
| hypothetical protein | SAMN06295900_104398 | Not Available | Positive | 2348995 - 2349765 | 27501.8 |
| transcriptional regulator, lysr family | SAMN06295900_104399 | Not Available | Positive | 2349806 - 2350771 | 35895.6 |
| gamma-glutamylputrescine oxidase | SAMN06295900_104400 | Not Available | Negative | 2350800 - 2352122 | 47390.7 |
| gamma-glutamylputrescine oxidase | SAMN06295900_104401 | Not Available | Negative | 2352316 - 2353608 | 46890.0 |
| protein of unknown function | SAMN06295900_104402 | Not Available | Negative | 2353683 - 2355323 | 57570.4 |
| putrescine transport system permease protein | SAMN06295900_104403 | Not Available | Negative | 2355359 - 2356276 | 33042.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.