Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| formylmethanofuran dehydrogenase, subunit c | SAMN06295900_104364 | Not Available | Negative | 2312098 - 2312982 | 30083.2 |
| formylmethanofuran-tetrahydromethanopterin formyltransferase | SAMN06295900_104365 | Not Available | Negative | 2312979 - 2313935 | 32654.1 |
| formylmethanofuran dehydrogenase, subunit a | SAMN06295900_104366 | Not Available | Negative | 2313949 - 2315694 | 63401.7 |
| formylmethanofuran dehydrogenase, subunit b | SAMN06295900_104367 | Not Available | Negative | 2315691 - 2317067 | 46601.4 |
| phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | SAMN06295900_104368 | Not Available | Negative | 2317361 - 2318101 | 25483.5 |
| predicted atp-dependent carboligase, atp-grasp superfamily | SAMN06295900_104369 | Not Available | Positive | 2318105 - 2319169 | 37663.0 |
| probable h4mpt-linked c1 transfer pathway protein | SAMN06295900_104370 | Not Available | Positive | 2319166 - 2320287 | 39424.8 |
| amino acid kinase family protein | SAMN06295900_104371 | Not Available | Positive | 2320373 - 2320993 | 22705.3 |
| uncharacterized protein, upf0264 family | SAMN06295900_104372 | Not Available | Negative | 2321036 - 2321782 | 25338.3 |
| hypothetical protein | SAMN06295900_104373 | Not Available | Negative | 2321863 - 2322474 | 22372.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.