Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretory pathway, component escs | SAMN06295900_104274 | Not Available | Negative | 2217152 - 2217427 | 9605.19 |
| type iii secretion protein r | SAMN06295900_104275 | Not Available | Negative | 2217420 - 2218088 | 24094.1 |
| type iii secretion system apparatus protein yscq/hrcq | SAMN06295900_104276 | Not Available | Negative | 2218085 - 2219203 | 39698.5 |
| hypothetical protein | SAMN06295900_104277 | Not Available | Negative | 2219197 - 2219598 | 14003.0 |
| hypothetical protein | SAMN06295900_104278 | Not Available | Negative | 2219588 - 2220031 | 16040.1 |
| atp synthase in type iii secretion protein n | SAMN06295900_104279 | Not Available | Negative | 2220012 - 2221412 | 49315.4 |
| inner membrane component of t3ss domain-containing protein | SAMN06295900_104280 | Not Available | Negative | 2221406 - 2222071 | 23166.7 |
| type ii/iii secretion system short domain-containing protein | SAMN06295900_104281 | Not Available | Negative | 2222097 - 2223659 | 54963.9 |
| hypothetical protein | SAMN06295900_104282 | Not Available | Negative | 2223660 - 2223941 | 10452.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN06295900_104283 | Not Available | Negative | 2223941 - 2224483 | 21000.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.