Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptidoglycan synthetase ftsi | SAMN06295900_1019 | Not Available | Positive | 8601 - 10412 | 65381.8 |
| udp-n-acetylmuramoylalanyl-d-glutamate--2, 6-diaminopimelate ligase | SAMN06295900_10110 | Not Available | Positive | 10409 - 11935 | 53243.2 |
| udp-n-acetylmuramoyl-tripeptide--d-alanyl-d- alanine ligase | SAMN06295900_10111 | Not Available | Positive | 11932 - 13395 | 50287.0 |
| phospho-n-acetylmuramoyl-pentapeptide- transferase | SAMN06295900_10112 | Not Available | Positive | 13411 - 14580 | 42933.8 |
| udp-n-acetylmuramoylalanine--d-glutamate ligase | SAMN06295900_10113 | Not Available | Positive | 14599 - 16116 | 53705.3 |
| cell division-specific peptidoglycan biosynthesis regulator ftsw | SAMN06295900_10114 | Not Available | Positive | 16113 - 17387 | 46033.2 |
| udp-n-acetylglucosamine-n- acetylmuramylpentapeptide n-acetylglucosamine transferase | SAMN06295900_10115 | Not Available | Positive | 17384 - 18490 | 39191.9 |
| udp-n-acetylmuramate--l-alanine ligase | SAMN06295900_10116 | Not Available | Positive | 18487 - 19881 | 48959.9 |
| d-alanine--d-alanine ligase | SAMN06295900_10117 | Not Available | Positive | 19878 - 20825 | 33621.2 |
| cell division protein ftsq | SAMN06295900_10118 | Not Available | Positive | 20835 - 21596 | 27842.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.