Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hdod domain-containing protein | SAMN06295900_104201 | Not Available | Negative | 2134443 - 2135897 | 52575.5 |
| diguanylate cyclase/phosphodiesterase with pas/pac sensor(s) | SAMN06295900_104202 | Not Available | Negative | 2135944 - 2137770 | 66173.9 |
| eal and modified hd-gyp domain-containing signal transduction protein | SAMN06295900_104203 | Not Available | Positive | 2138109 - 2139419 | 46866.6 |
| peroxiredoxin | SAMN06295900_104204 | Not Available | Positive | 2139561 - 2140127 | 20254.2 |
| hypothetical protein | SAMN06295900_104205 | Not Available | Positive | 2140402 - 2142708 | 82516.3 |
| hypothetical protein | SAMN06295900_104206 | Not Available | Negative | 2142629 - 2143180 | 17794.9 |
| hypothetical protein | SAMN06295900_104207 | Not Available | Negative | 2143182 - 2143580 | 14324.0 |
| transcriptional regulator, tetr family | SAMN06295900_104208 | Not Available | Negative | 2143678 - 2144358 | 23787.6 |
| nicotinamidase-related amidase | SAMN06295900_104209 | Not Available | Positive | 2144428 - 2145027 | 21363.7 |
| multidrug efflux pump | SAMN06295900_104210 | Not Available | Negative | 2145112 - 2148408 | 116336.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.