Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, lysr family | SAMN06295900_104141 | Not Available | Positive | 2069254 - 2070180 | 34309.8 |
| uncharacterized conserved protein yjbj, upf0337 family | SAMN06295900_104142 | Not Available | Negative | 2070354 - 2070536 | 6516.67 |
| penicillin binding protein transpeptidase domain-containing protein | SAMN06295900_104143 | Not Available | Negative | 2070637 - 2073783 | 114745.0 |
| luxr family transcriptional regulator | SAMN06295900_104144 | Not Available | Positive | 2074439 - 2075152 | 26807.1 |
| branched-chain amino acid transport system atp-binding protein | SAMN06295900_104145 | Not Available | Negative | 2075255 - 2075986 | 26059.5 |
| predicted alpha/beta hydrolase | SAMN06295900_104146 | Not Available | Positive | 2076239 - 2077279 | 38088.6 |
| 4'-phosphopantetheinyl transferase | SAMN06295900_104147 | Not Available | Positive | 2077409 - 2078158 | 26361.1 |
| hypothetical protein | SAMN06295900_104148 | Not Available | Negative | 2078226 - 2078396 | 5884.79 |
| histidine ammonia-lyase | SAMN06295900_104149 | Not Available | Positive | 2078963 - 2080498 | 53011.9 |
| transcriptional regulator, histidine utilization repressor, gntr family | SAMN06295900_104150 | Not Available | Positive | 2080517 - 2081212 | 25617.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.