Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphoserine aminotransferase apoenzyme | SAMN06295900_104111 | Not Available | Positive | 2035548 - 2036630 | 39737.8 |
| chorismate mutase | SAMN06295900_104112 | Not Available | Positive | 2036695 - 2037777 | 39361.0 |
| histidinol-phosphate aminotransferase | SAMN06295900_104113 | Not Available | Positive | 2037893 - 2039002 | 39634.5 |
| prephenate dehydrogenase | SAMN06295900_104114 | Not Available | Positive | 2039062 - 2040006 | 32724.4 |
| 3-phosphoshikimate 1-carboxyvinyltransferase | SAMN06295900_104115 | Not Available | Positive | 2040019 - 2041323 | 46555.0 |
| cytidylate kinase | SAMN06295900_104116 | Not Available | Positive | 2041331 - 2042005 | 23919.6 |
| ssu ribosomal protein s1p | SAMN06295900_104117 | Not Available | Positive | 2042194 - 2043909 | 62288.0 |
| integration host factor subunit beta | SAMN06295900_104118 | Not Available | Positive | 2043932 - 2044255 | 11846.3 |
| uncharacterized integral membrane protein | SAMN06295900_104119 | Not Available | Positive | 2044556 - 2044849 | 10470.4 |
| lipopolysaccharide biosynthesis regulator ycim, contains six tpr domains and a predicted metal-binding c-terminal domain | SAMN06295900_104120 | Not Available | Positive | 2044904 - 2046079 | 43762.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.