Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp protease atp-binding subunit clpx | SAMN06295900_103466 | Not Available | Positive | 1882534 - 1883805 | 46365.2 |
| atp-dependent proteinase. serine peptidase. merops family s16 | SAMN06295900_103467 | Not Available | Positive | 1883996 - 1886413 | 89362.9 |
| dna-binding protein hu-beta | SAMN06295900_103468 | Not Available | Positive | 1886645 - 1886917 | 9312.48 |
| Trna-val | Not Available | Not Available | Positive | 1887054 - 1887129 | Not Available |
| type vi secretion system (t6ss), amidase effector protein 4 | SAMN06295900_103470 | Not Available | Positive | 1887519 - 1888019 | 18417.8 |
| type vi secretion system (t6ss), amidase immunity protein | SAMN06295900_103471 | Not Available | Positive | 1888016 - 1888477 | 17153.3 |
| 2-haloacid dehalogenase | SAMN06295900_103472 | Not Available | Positive | 1888925 - 1889650 | 27716.8 |
| putative hydrolase of the had superfamily | SAMN06295900_103473 | Not Available | Positive | 1889775 - 1890494 | 27052.0 |
| transcriptional regulator, asnc family | SAMN06295900_103474 | Not Available | Positive | 1890541 - 1891035 | 18509.3 |
| l-lysine exporter family protein lyse/argo | SAMN06295900_103475 | Not Available | Negative | 1891195 - 1891845 | 22464.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.