Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted fe2+/mn2+ transporter, vit1/ccc1 family | SAMN06295900_103446 | Not Available | Positive | 1858462 - 1859589 | 39531.3 |
| dna excision repair protein ercc-2 | SAMN06295900_103447 | Not Available | Negative | 1859632 - 1861884 | 82996.2 |
| vrr-nuc domain-containing protein | SAMN06295900_103448 | Not Available | Negative | 1861881 - 1863623 | 64433.1 |
| d-mannonate dehydratase | SAMN06295900_103449 | Not Available | Negative | 1863709 - 1864752 | 38267.8 |
| altronate hydrolase | SAMN06295900_103450 | Not Available | Negative | 1864792 - 1866339 | 54273.7 |
| sugar phosphate permease | SAMN06295900_103451 | Not Available | Negative | 1866394 - 1867674 | 45569.4 |
| tagaturonate reductase | SAMN06295900_103452 | Not Available | Negative | 1867812 - 1868942 | 41680.9 |
| 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide a dehydrogenase | SAMN06295900_103453 | Not Available | Negative | 1868965 - 1869987 | 35874.5 |
| gntr family transcriptional regulator, transcriptional repressor for pyruvate dehydrogenase complex | SAMN06295900_103454 | Not Available | Positive | 1870327 - 1871034 | 25289.6 |
| hypothetical protein | SAMN06295900_103455 | Not Available | Negative | 1871139 - 1871864 | 26656.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.