Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid abc transporter substrate-binding protein, paat family | SAMN06295900_103386 | Not Available | Negative | 1792262 - 1792996 | 25857.1 |
| nucleoside-diphosphate-sugar epimerase | SAMN06295900_103387 | Not Available | Positive | 1793383 - 1794273 | 30907.7 |
| dna-binding transcriptional regulator, merr family | SAMN06295900_103388 | Not Available | Negative | 1794349 - 1794741 | 14351.2 |
| pimeloyl-acp methyl ester carboxylesterase | SAMN06295900_103389 | Not Available | Positive | 1794829 - 1795752 | 33152.7 |
| protein of unknown function | SAMN06295900_103390 | Not Available | Negative | 1795788 - 1797671 | 68440.9 |
| putative flippase gtra (transmembrane translocase of bactoprenol-linked glucose) | SAMN06295900_103391 | Not Available | Negative | 1797668 - 1798066 | 14301.6 |
| glycosyltransferase involved in cell wall bisynthesis | SAMN06295900_103392 | Not Available | Negative | 1798059 - 1799009 | 34571.1 |
| hypothetical protein | SAMN06295900_103393 | Not Available | Positive | 1799255 - 1799515 | 9034.48 |
| protein of unknown function | SAMN06295900_103394 | Not Available | Positive | 1799629 - 1800033 | 14603.5 |
| pp_01604 | SAMN06295900_103395 | Not Available | Positive | 1800030 - 1800599 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.