Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rna methyltransferase, trmh family | SAMN06295900_103336 | Not Available | Positive | 1739109 - 1739897 | 27681.2 |
| hypothetical protein | SAMN06295900_103337 | Not Available | Negative | 1739910 - 1740722 | 30095.7 |
| phosphoenolpyruvate synthase | SAMN06295900_103338 | Not Available | Positive | 1741060 - 1743465 | 87995.5 |
| membrane protein implicated in regulation of membrane protease activity | SAMN06295900_103339 | Not Available | Positive | 1743576 - 1744052 | 17041.8 |
| spfh domain, band 7 family protein | SAMN06295900_103340 | Not Available | Positive | 1744056 - 1744994 | 33685.7 |
| ssra-binding protein | SAMN06295900_103341 | Not Available | Negative | 1745013 - 1745459 | 17130.9 |
| ribosome association toxin past (rata) of the ratab toxin-antitoxin module | SAMN06295900_103342 | Not Available | Positive | 1745557 - 1745994 | 17045.4 |
| hypothetical protein | SAMN06295900_103343 | Not Available | Positive | 1745991 - 1746323 | 12227.8 |
| inosine-5'-monophosphate dehydrogenase | SAMN06295900_103344 | Not Available | Positive | 1746635 - 1748095 | 51982.9 |
| gmp synthase (glutamine-hydrolyzing) | SAMN06295900_103345 | Not Available | Positive | 1748291 - 1749874 | 58376.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.