Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phosphatidate cytidylyltransferase | SAMN06295900_103326 | Not Available | Positive | 1728021 - 1728842 | 28576.3 |
| 1-deoxy-d-xylulose 5-phosphate reductoisomerase | SAMN06295900_103327 | Not Available | Positive | 1728871 - 1730094 | 42644.4 |
| site-2 protease. metallo peptidase. merops family m50b | SAMN06295900_103328 | Not Available | Positive | 1730108 - 1731484 | 48594.2 |
| beta-barrel assembly machine subunit bama | SAMN06295900_103329 | Not Available | Positive | 1731553 - 1733853 | 84663.0 |
| periplasmic chaperone for outer membrane proteins skp | SAMN06295900_103330 | Not Available | Positive | 1733886 - 1734416 | 19805.6 |
| udp-3-o-[3-hydroxymyristoyl] glucosamine n-acyltransferase | SAMN06295900_103331 | Not Available | Positive | 1734437 - 1735510 | 36600.1 |
| 3-hydroxyacyl-[acyl-carrier-protein] dehydratase | SAMN06295900_103332 | Not Available | Positive | 1735660 - 1736118 | 17280.1 |
| acyl-[acyl-carrier-protein]--udp-n- acetylglucosamine o-acyltransferase | SAMN06295900_103333 | Not Available | Positive | 1736225 - 1737013 | 27604.9 |
| lipid-a-disaccharide synthase | SAMN06295900_103334 | Not Available | Positive | 1737013 - 1738182 | 42403.1 |
| rnase hii | SAMN06295900_103335 | Not Available | Positive | 1738179 - 1739048 | 30385.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.