Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ott_1508-like deaminase | SAMN06295900_103306 | Not Available | Positive | 1702056 - 1702946 | 33119.1 |
| cardiolipin synthetase 2 | SAMN06295900_103307 | Not Available | Negative | 1703024 - 1704481 | 54255.4 |
| uncharacterized membrane protein yhhn | SAMN06295900_103308 | Not Available | Negative | 1704582 - 1705307 | 24779.7 |
| [lsu ribosomal protein l3p]-glutamine n5-methyltransferase | SAMN06295900_103309 | Not Available | Negative | 1705319 - 1706206 | 32285.2 |
| succinyldiaminopimelate desuccinylase | SAMN06295900_103310 | Not Available | Negative | 1706236 - 1707372 | 40669.4 |
| transcriptional regulator, spx/mgsr family | SAMN06295900_103311 | Not Available | Negative | 1707479 - 1707841 | 13177.0 |
| 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate n-succinyltransferase | SAMN06295900_103312 | Not Available | Negative | 1707844 - 1708671 | 29533.3 |
| succinyldiaminopimelate aminotransferase apoenzyme | SAMN06295900_103313 | Not Available | Negative | 1708746 - 1710200 | 52795.1 |
| condensin subunit smc | SAMN06295900_103314 | Not Available | Positive | 1710406 - 1713924 | 129524.0 |
| zipa, c-terminal ftsz-binding domain | SAMN06295900_103315 | Not Available | Positive | 1714016 - 1715248 | 44141.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.