Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| enamine deaminase rida, house cleaning of reactive enamine intermediates, yjgf/yer057c/uk114 family | SAMN06295900_103236 | Not Available | Negative | 1628793 - 1629149 | 12907.2 |
| sarcosine oxidase subunit beta | SAMN06295900_103237 | Not Available | Negative | 1629164 - 1630348 | 41756.1 |
| nadph-dependent 2,4-dienoyl-coa reductase, sulfur reductase | SAMN06295900_103238 | Not Available | Negative | 1630345 - 1631751 | 49083.4 |
| 2fe-2s iron-sulfur cluster binding domain-containing protein | SAMN06295900_103239 | Not Available | Negative | 1631741 - 1632085 | 12196.8 |
| glycine/d-amino acid oxidase | SAMN06295900_103240 | Not Available | Negative | 1632075 - 1633202 | 40554.3 |
| putative spermidine/putrescine transport system permease protein | SAMN06295900_103241 | Not Available | Negative | 1633214 - 1634008 | 28535.9 |
| putative spermidine/putrescine transport system permease protein | SAMN06295900_103242 | Not Available | Negative | 1634023 - 1634949 | 32767.3 |
| putative spermidine/putrescine transport system atp-binding protein | SAMN06295900_103243 | Not Available | Negative | 1634942 - 1636009 | 39423.9 |
| putative spermidine/putrescine transport system substrate-binding protein | SAMN06295900_103244 | Not Available | Negative | 1636065 - 1637102 | 37290.8 |
| transcriptional regulator, lysr family | SAMN06295900_103245 | Not Available | Positive | 1637285 - 1638193 | 33080.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.