Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lysr family transcriptional regulator, regulator for mete and meth | SAMN06295900_103216 | Not Available | Negative | 1610423 - 1611319 | 33105.2 |
| cystathione beta-lyase | SAMN06295900_103217 | Not Available | Positive | 1611444 - 1612688 | 45923.1 |
| extracellular solute-binding protein, family 3 | SAMN06295900_103218 | Not Available | Positive | 1612926 - 1613177 | 8898.81 |
| extracellular solute-binding protein, family 3 | SAMN06295900_103219 | Not Available | Positive | 1613184 - 1613723 | 19291.1 |
| amino acid abc transporter membrane protein, paat family | SAMN06295900_103220 | Not Available | Positive | 1613771 - 1614430 | 23270.9 |
| polar amino acid transport system atp-binding protein/glutamate/aspartate transport system atp-binding protein | SAMN06295900_103221 | Not Available | Positive | 1614487 - 1615212 | 26595.4 |
| transcriptional regulator, gntr family | SAMN06295900_103222 | Not Available | Negative | 1615256 - 1616671 | 50985.4 |
| beta-alanine--pyruvate transaminase | SAMN06295900_103223 | Not Available | Positive | 1616786 - 1618114 | 47513.9 |
| methylmalonate-semialdehyde dehydrogenase | SAMN06295900_103224 | Not Available | Positive | 1618163 - 1619686 | 54604.7 |
| transcriptional regulator, contains xre-family hth domain | SAMN06295900_103225 | Not Available | Negative | 1619734 - 1620648 | 34564.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.