Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dihydrodipicolinate synthase | SAMN06295900_103146 | Not Available | Positive | 1531442 - 1532359 | 32221.0 |
| beta-barrel assembly machine subunit bamc | SAMN06295900_103147 | Not Available | Positive | 1532480 - 1533619 | 41532.9 |
| phosphoribosyl 1,2-cyclic phosphodiesterase | SAMN06295900_103148 | Not Available | Positive | 1533628 - 1534413 | 27666.6 |
| 50s ribosomal protein l16 3-hydroxylase | SAMN06295900_103149 | Not Available | Negative | 1535043 - 1536275 | 46130.3 |
| fkbp-type peptidyl prolyl cis-trans isomerase /apo-metallochaperone slyd | SAMN06295900_103150 | Not Available | Positive | 1536308 - 1536859 | 20265.2 |
| hypothetical protein | SAMN06295900_103151 | Not Available | Negative | 1536839 - 1538134 | 46652.1 |
| dna mismatch repair protein muts | SAMN06295900_103152 | Not Available | Negative | 1538088 - 1540751 | 96489.3 |
| type vi secretion system secreted protein vgrg | SAMN06295900_103153 | Not Available | Positive | 1541527 - 1544040 | 92118.3 |
| hypothetical protein | SAMN06295900_103154 | Not Available | Positive | 1544044 - 1544928 | 33510.4 |
| hypothetical protein | SAMN06295900_103155 | Not Available | Positive | 1544943 - 1546175 | 46397.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.