Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| xylose abc transporter membrane protein | SAMN06295900_10386 | Not Available | Positive | 1464088 - 1465287 | 41643.9 |
| d-xylose dehydrogenase | SAMN06295900_10387 | Not Available | Positive | 1465353 - 1466123 | 27525.9 |
| xylono-1,4-lactonase | SAMN06295900_10388 | Not Available | Positive | 1466120 - 1467019 | 32424.6 |
| dihydroxy-acid dehydratase | SAMN06295900_10389 | Not Available | Positive | 1467037 - 1468821 | 63501.4 |
| pqq enzyme repeat-containing protein | SAMN06295900_10390 | Not Available | Positive | 1468959 - 1470536 | 54897.4 |
| Trna-met | Not Available | Not Available | Positive | 1470597 - 1470673 | Not Available |
| methyl-accepting chemotaxis protein | SAMN06295900_10392 | Not Available | Positive | 1471003 - 1472565 | 54549.4 |
| dna polymerase-4 | SAMN06295900_10393 | Not Available | Positive | 1472707 - 1473903 | 43966.0 |
| cytosine deaminase | SAMN06295900_10394 | Not Available | Positive | 1474022 - 1475314 | 46184.0 |
| oligopeptidase a metallo peptidase. merops family m03a | SAMN06295900_10395 | Not Available | Negative | 1475449 - 1477584 | 79277.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.