Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, laci family | SAMN06295900_102488 | Not Available | Negative | 1350849 - 1351877 | 36144.0 |
| carbohydrate abc transporter atp-binding protein, cut1 family | SAMN06295900_102489 | Not Available | Positive | 1352128 - 1353279 | 41900.6 |
| carbohydrate abc transporter substrate-binding protein, cut1 family | SAMN06295900_102490 | Not Available | Positive | 1353330 - 1354583 | 46204.8 |
| carbohydrate abc transporter membrane protein 1, cut1 family | SAMN06295900_102491 | Not Available | Positive | 1354689 - 1355606 | 33798.9 |
| carbohydrate abc transporter membrane protein 2, cut1 family | SAMN06295900_102492 | Not Available | Positive | 1355623 - 1356474 | 31413.0 |
| beta-galactosidase | SAMN06295900_102493 | Not Available | Positive | 1356535 - 1358514 | 73322.0 |
| mfs transporter, set family, sugar efflux transporter | SAMN06295900_102494 | Not Available | Positive | 1358519 - 1359772 | 43329.9 |
| arabinogalactan endo-1,4-beta-galactosidase | SAMN06295900_102495 | Not Available | Negative | 1359842 - 1361017 | 42624.2 |
| protein of unknown function | SAMN06295900_102496 | Not Available | Negative | 1361168 - 1362472 | 47420.3 |
| putative flippase gtra (transmembrane translocase of bactoprenol-linked glucose) | SAMN06295900_102497 | Not Available | Negative | 1362469 - 1362882 | 14883.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.