Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system protein imph | SAMN06295900_102418 | Not Available | Negative | 1269462 - 1270841 | 49685.3 |
| type vi secretion system protein impg | SAMN06295900_102419 | Not Available | Negative | 1270805 - 1272646 | 67623.9 |
| type vi secretion system lysozyme-like protein | SAMN06295900_102420 | Not Available | Negative | 1272643 - 1273044 | 14450.3 |
| type vi secretion system secreted protein hcp | SAMN06295900_102421 | Not Available | Negative | 1273106 - 1273672 | 20747.6 |
| type vi secretion protein, evpb/vc_a0108 family/type vi secretion protein, vc_a0107 family | SAMN06295900_102422 | Not Available | Negative | 1273698 - 1276010 | 82697.8 |
| hypothetical protein | SAMN06295900_102423 | Not Available | Negative | 1276460 - 1276708 | 9162.83 |
| sigma-54 interaction domain-containing protein | SAMN06295900_102424 | Not Available | Negative | 1276765 - 1277748 | 36277.6 |
| hypothetical protein | SAMN06295900_102425 | Not Available | Negative | 1278210 - 1278479 | 9106.65 |
| type iii secretion translocon protein hrpf | SAMN06295900_102426 | Not Available | Positive | 1278905 - 1280740 | 65698.3 |
| hypothetical protein | SAMN06295900_102427 | Not Available | Negative | 1280834 - 1281520 | 24786.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.