Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type vi secretion system protein impa | SAMN06295900_102408 | Not Available | Negative | 1253517 - 1254806 | 45900.7 |
| type vi secretion system protein impl | SAMN06295900_102409 | Not Available | Negative | 1254829 - 1259007 | 147522.0 |
| type vi secretion system protein impk | SAMN06295900_102410 | Not Available | Negative | 1259004 - 1259981 | 35247.7 |
| type vi secretion system protein impj | SAMN06295900_102411 | Not Available | Negative | 1259968 - 1261485 | 54472.7 |
| type vi secretion system protein | SAMN06295900_102412 | Not Available | Negative | 1261518 - 1262072 | 19377.6 |
| protein of unknown function | SAMN06295900_102413 | Not Available | Negative | 1262069 - 1262455 | 13556.8 |
| protein of unknown function | SAMN06295900_102414 | Not Available | Negative | 1262459 - 1263028 | 20329.3 |
| uncharacterized protein yjbi, contains pentapeptide repeats | SAMN06295900_102415 | Not Available | Negative | 1263025 - 1264149 | 40534.3 |
| hypothetical protein | SAMN06295900_102416 | Not Available | Negative | 1264146 - 1266806 | 93953.4 |
| type vi secretion system secreted protein vgrg | SAMN06295900_102417 | Not Available | Negative | 1266814 - 1269465 | 93256.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.