Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| predicted arabinose efflux permease, mfs family | SAMN06295900_102398 | Not Available | Negative | 1240324 - 1241577 | 43794.2 |
| siderophore synthetase component | SAMN06295900_102399 | Not Available | Negative | 1241581 - 1243491 | 72214.7 |
| nad/nadp octopine/nopaline dehydrogenase, alpha-helical domain | SAMN06295900_102400 | Not Available | Negative | 1243504 - 1244670 | 42370.0 |
| cystathionine beta-synthase | SAMN06295900_102401 | Not Available | Negative | 1244667 - 1245716 | 36770.1 |
| diaminopimelate decarboxylase | SAMN06295900_102402 | Not Available | Negative | 1245713 - 1247161 | 52032.1 |
| iron complex outermembrane recepter protein | SAMN06295900_102403 | Not Available | Negative | 1247180 - 1249252 | 73551.2 |
| protein n-acetyltransferase, rimj/riml family | SAMN06295900_102404 | Not Available | Negative | 1249668 - 1251929 | 81916.9 |
| sporulation related domain-containing protein | SAMN06295900_102405 | Not Available | Positive | 1252071 - 1252619 | 18096.0 |
| hypothetical protein | SAMN06295900_102406 | Not Available | Negative | 1252688 - 1252966 | 10176.3 |
| hypothetical protein | SAMN06295900_102407 | Not Available | Positive | 1253096 - 1253404 | 10865.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.