Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN06295900_102378 | Not Available | Positive | 1205857 - 1206342 | 16834.5 |
| iron complex outermembrane recepter protein | SAMN06295900_102379 | Not Available | Positive | 1206581 - 1208800 | 81428.3 |
| uncharacterized iron-regulated membrane protein | SAMN06295900_102380 | Not Available | Positive | 1208805 - 1209956 | 42801.3 |
| 5-oxoprolinase (atp-hydrolysing) | SAMN06295900_102381 | Not Available | Negative | 1209993 - 1213634 | 130692.0 |
| predicted arabinose efflux permease, mfs family | SAMN06295900_102382 | Not Available | Negative | 1213660 - 1214958 | 46537.9 |
| uncharacterized protein ycsi, upf0317 family | SAMN06295900_102383 | Not Available | Negative | 1214980 - 1215750 | 28162.9 |
| transcriptional regulator, lysr family | SAMN06295900_102384 | Not Available | Positive | 1216112 - 1217053 | 33840.3 |
| uncharacterized membrane protein yoak, upf0700 family | SAMN06295900_102385 | Not Available | Negative | 1217139 - 1217864 | 25965.4 |
| autotransporter-associated beta strand repeat-containing protein | SAMN06295900_102386 | Not Available | Negative | 1218040 - 1221693 | 115280.0 |
| hypothetical protein | SAMN06295900_102387 | Not Available | Negative | 1222559 - 1223260 | 24585.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.