Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| flagellar motor protein motb | SAMN06295900_102358 | Not Available | Positive | 1186514 - 1187161 | 22753.3 |
| protein of unknown function | SAMN06295900_102359 | Not Available | Positive | 1187220 - 1187843 | 22594.8 |
| fatty acid desaturase | SAMN06295900_102360 | Not Available | Positive | 1188020 - 1189096 | 40648.9 |
| 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit | SAMN06295900_102361 | Not Available | Positive | 1189154 - 1189462 | 11554.6 |
| 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin reductase subunit | SAMN06295900_102362 | Not Available | Positive | 1189467 - 1190747 | 45302.3 |
| sugar phosphate isomerase/epimerase | SAMN06295900_102363 | Not Available | Positive | 1190801 - 1191640 | 32810.8 |
| transcriptional regulator, hxlr family | SAMN06295900_102364 | Not Available | Negative | 1191664 - 1192098 | 16083.3 |
| flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase ssud and methylene tetrahydromethanopterin reductase) | SAMN06295900_102365 | Not Available | Positive | 1192447 - 1193424 | 36193.1 |
| hypothetical protein | SAMN06295900_102366 | Not Available | Positive | 1193478 - 1194062 | 21107.0 |
| isopentenyl transferase | SAMN06295900_102367 | Not Available | Positive | 1194079 - 1194798 | 26839.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.