Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sarcosine oxidase subunit beta | SAMN06295900_102298 | Not Available | Positive | 1131699 - 1132868 | 41835.1 |
| transcriptional regulator, arac family | SAMN06295900_102299 | Not Available | Positive | 1132865 - 1133200 | 12366.9 |
| hypothetical protein | SAMN06295900_102300 | Not Available | Positive | 1133552 - 1133665 | 3958.84 |
| effector protein | SAMN06295900_102301 | Not Available | Positive | 1133769 - 1134446 | 24987.2 |
| hypothetical protein | SAMN06295900_102302 | Not Available | Positive | 1134681 - 1135484 | 28939.0 |
| arac family transcriptional regulator, activator of mtrcde | SAMN06295900_102303 | Not Available | Negative | 1135565 - 1136539 | 35792.4 |
| uncharacterized peroxidase-related enzyme | SAMN06295900_102304 | Not Available | Positive | 1136656 - 1137192 | 18647.4 |
| hypothetical protein | SAMN06295900_102305 | Not Available | Positive | 1137360 - 1138220 | 30423.1 |
| uncharacterized membrane protein ydjx, tvp38/tmem64 family, snare-associated domain | SAMN06295900_102306 | Not Available | Positive | 1138231 - 1140465 | 81130.9 |
| metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family | SAMN06295900_102307 | Not Available | Positive | 1140462 - 1141283 | 29613.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.