Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed | SAMN06295900_102268 | Not Available | Positive | 1095903 - 1096664 | 27305.2 |
| hypothetical protein | SAMN06295900_102269 | Not Available | Positive | 1097027 - 1097365 | 11920.4 |
| uncharacterized protein ydal | SAMN06295900_102270 | Not Available | Positive | 1097387 - 1099030 | 60936.2 |
| protein of unknown function | SAMN06295900_102271 | Not Available | Positive | 1099308 - 1099766 | 15852.6 |
| transcriptional regulator, laci family | SAMN06295900_102272 | Not Available | Negative | 1099862 - 1100962 | 38681.4 |
| altronate hydrolase | SAMN06295900_102273 | Not Available | Positive | 1101090 - 1102637 | 55179.2 |
| sugar phosphate permease | SAMN06295900_102274 | Not Available | Positive | 1102726 - 1104066 | 47699.5 |
| 2,4-dihydroxyhept-2-enedioate aldolase | SAMN06295900_102275 | Not Available | Positive | 1104035 - 1104832 | 27775.1 |
| mfs transporter, aahs family, 4-hydroxybenzoate transporter | SAMN06295900_102276 | Not Available | Negative | 1104829 - 1106187 | 47093.8 |
| succinate semialdehyde dehydrogenase | SAMN06295900_102277 | Not Available | Negative | 1106575 - 1108047 | 51895.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.