Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Burkholderiaceae
Genus
Trinickia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Burkholderiaceae |
| Genus | Trinickia |
| Species | Trinickia caryophylli |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Viridiplantae, Allium cepa, Dianthus caryophyllus |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1147290 bp
Thymine Count
1160892 bp
Guanine Count
2143000 bp
Cytosine Count
2092206 bp
Genome Length
6543652 bp
Protein-coding Genes
5797 genes
Non-Coding Genes
53 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, gntr family | SAMN06295900_102258 | Not Available | Negative | 1088565 - 1089293 | 26938.5 |
| hypothetical protein | SAMN06295900_102259 | Not Available | Positive | 1089609 - 1089758 | 4864.77 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN06295900_102260 | Not Available | Positive | 1089790 - 1090341 | 20607.7 |
| transmembrane transcriptional regulator (anti-sigma factor rsiw) | SAMN06295900_102261 | Not Available | Positive | 1090338 - 1091135 | 28374.6 |
| predicted lipoprotein with conserved yx(fwy)xxd motif | SAMN06295900_102262 | Not Available | Positive | 1091305 - 1091667 | 12852.2 |
| hypothetical protein | SAMN06295900_102263 | Not Available | Negative | 1091702 - 1092577 | 29847.4 |
| tir chaperone protein (cest) family protein | SAMN06295900_102264 | Not Available | Negative | 1092608 - 1093012 | 14919.9 |
| predicted o-methyltransferase yrrm | SAMN06295900_102265 | Not Available | Negative | 1093270 - 1093953 | 24531.6 |
| transcriptional regulator, tetr family | SAMN06295900_102266 | Not Available | Positive | 1094049 - 1094747 | 25729.9 |
| toxin with a h, d/n and c signature | SAMN06295900_102267 | Not Available | Negative | 1094727 - 1095575 | 31106.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.