Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium yanoikuyae |
| Strain | B1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium yanoikuyae strain B1 contig94, whole genome shotgun
Gene Summary
Adenine Count
914785 bp
Thymine Count
911779 bp
Guanine Count
1652245 bp
Cytosine Count
1677338 bp
Genome Length
5156147 bp
Protein-coding Genes
4582 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| isoleucine--trna ligase | IH86_04265 | Not Available | Negative | 928583 - 931498 | 109425.0 |
| riboflavin biosynthesis protein ribf | IH86_04270 | Not Available | Negative | 931659 - 932576 | 32664.3 |
| diacylglycerol kinase | IH86_04275 | Not Available | Negative | 932630 - 933118 | 17886.3 |
| phosphoribosylaminoimidazole carboxylase | IH86_04280 | Not Available | Negative | 933243 - 934313 | 37546.4 |
| n5-carboxyaminoimidazole ribonucleotide mutase | IH86_04285 | Not Available | Negative | 934322 - 934810 | 16692.3 |
| phosphoglyceromutase | IH86_04290 | Not Available | Negative | 935063 - 935749 | 26000.8 |
| serine protease | IH86_04295 | Not Available | Positive | 935904 - 937787 | 65965.4 |
| dna mismatch repair protein mutl | IH86_04300 | Not Available | Negative | 937798 - 939612 | 65083.0 |
| rod shape-determining protein mreb | IH86_04305 | Not Available | Positive | 939747 - 940793 | 36753.4 |
| rod shape-determining protein mrec | IH86_04310 | Not Available | Positive | 940811 - 941731 | 31995.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
