Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Sphingomonadales
Family
Sphingobiaceae
Genus
Sphingobium
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingobiaceae |
| Genus | Sphingobium |
| Species | Sphingobium yanoikuyae |
| Strain | B1 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Not Available |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Sphingobium yanoikuyae strain B1 contig94, whole genome shotgun
Gene Summary
Adenine Count
914785 bp
Thymine Count
911779 bp
Guanine Count
1652245 bp
Cytosine Count
1677338 bp
Genome Length
5156147 bp
Protein-coding Genes
4582 genes
Non-Coding Genes
77 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Is5 family transposase orfb | IH86_17830 | Not Available | Positive | 3736159 - 3736467 | 12034.7 |
| hypothetical protein | IH86_17835 | Not Available | Negative | 3736533 - 3737336 | 29759.9 |
| Baseplate assembly protein | IH86_17845 | Not Available | Positive | 3738429 - 3738779 | 12385.3 |
| Tail sheath protein | IH86_17850 | Not Available | Positive | 3738794 - 3739321 | 17782.7 |
| Is5 family transposase orfb | IH86_17855 | Not Available | Negative | 3739476 - 3739784 | 12034.7 |
| hypothetical protein | IH86_17860 | Not Available | Negative | 3739849 - 3740520 | 23228.9 |
| hypothetical protein | IH86_17865 | Not Available | Positive | 3740662 - 3741015 | 13537.2 |
| Transposase/is protein | IH86_17870 | Not Available | Negative | 3741672 - 3742337 | 24645.8 |
| 23s ribosomal rna | Not Available | Not Available | Positive | 1412 - 4211 | Not Available |
| phosphoenolpyruvate carboxylase | IH86_00005 | Not Available | Negative | 1 - 1468 | 53600.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
