Sphingobium yanoikuyae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium yanoikuyae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium yanoikuyae strain SK-NIH.Env6_1116 NODE_126, whole

Gene Summary

Adenine Count

1044020 bp

Thymine Count

1039951 bp

Guanine Count

1862718 bp

Cytosine Count

1875819 bp

Genome Length

5822508 bp

Protein-coding Genes

5290 genes

Non-Coding Genes

172 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
recombinase family proteinDAH51_26910Not AvailableNegative5602392 - 560395458632.7
hypothetical proteinDAH51_26940Not AvailablePositive5608551 - 560892814026.0
hypothetical proteinDAH51_26945Not AvailablePositive5608943 - 56091347096.63
hypothetical proteinDAH51_27075Not AvailablePositive5625110 - 56253468737.36
fad-dependent oxidoreductaseDAH51_27080Not AvailableNegative5625463 - 562727465917.1
glutathione s-transferase family proteinDAH51_27085Not AvailablePositive5627444 - 562808523285.1
hypothetical proteinDAH51_27090Not AvailablePositive5628556 - 562910119382.2
hypothetical proteinDAH51_27095Not AvailableNegative5629174 - 56293657056.19
hypothetical proteinDAH51_27100Not AvailablePositive5630037 - 56302346726.43
hypothetical proteinDAH51_27105Not AvailablePositive5630608 - 563094612104.6

Displaying genes 5271 – 5280 of 5462 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0005202(S)-4-hydroxy-2-oxopentanoateC5H7O4Chemical structure of (S)-4-hydroxy-2-oxopentanoateNot available
Average131.108Da
Monoisotopic131.034982285Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.