Sphingobium yanoikuyae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium yanoikuyae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium yanoikuyae strain SK-NIH.Env6_1116 NODE_126, whole

Gene Summary

Adenine Count

1044020 bp

Thymine Count

1039951 bp

Guanine Count

1862718 bp

Cytosine Count

1875819 bp

Genome Length

5822508 bp

Protein-coding Genes

5290 genes

Non-Coding Genes

172 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinDAH51_26220Not AvailablePositive5488512 - 54887729758.72
cell filamentation protein ficDAH51_26225Not AvailablePositive5488776 - 549005648372.4
duf3768 domain-containing proteinDAH51_26230Not AvailablePositive5490384 - 549077314664.0
hypothetical proteinDAH51_26235Not AvailablePositive5490785 - 549107210664.4
hypothetical proteinDAH51_26240Not AvailablePositive5491069 - 54913359690.15
hypothetical proteinDAH51_26245Not AvailablePositive5491348 - 54915577840.34
hypothetical proteinDAH51_26250Not AvailablePositive5491554 - 549208719965.8
hypothetical proteinDAH51_26255Not AvailableNegative5492129 - 549241910644.3
hypothetical proteinDAH51_26260Not AvailablePositive5492885 - 54931219203.16
hypothetical proteinDAH51_26265Not AvailablePositive5493521 - 54937819178.81

Displaying genes 5141 – 5150 of 5462 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0005202(S)-4-hydroxy-2-oxopentanoateC5H7O4Chemical structure of (S)-4-hydroxy-2-oxopentanoateNot available
Average131.108Da
Monoisotopic131.034982285Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.