Sphingobium yanoikuyae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium yanoikuyae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium yanoikuyae strain SK-NIH.Env6_1116 NODE_126, whole

Gene Summary

Adenine Count

1044020 bp

Thymine Count

1039951 bp

Guanine Count

1862718 bp

Cytosine Count

1875819 bp

Genome Length

5822508 bp

Protein-coding Genes

5290 genes

Non-Coding Genes

172 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
n-acetylmuramic acid 6-phosphate etheraseDAH51_17545Not AvailableNegative3704748 - 370563830672.8
sis domain-containing proteinDAH51_17550Not AvailablePositive3705811 - 370686936448.0
n-acetylglucosamine-6-phosphate deacetylaseDAH51_17555Not AvailablePositive3706866 - 370801739774.1
d-lactate dehydrogenaseDAH51_17560Not AvailablePositive3708014 - 370971161572.7
atpaseDAH51_17565Not AvailablePositive3709705 - 371056529984.7
hypothetical proteinDAH51_17570Not AvailableNegative3710680 - 37108687602.29
hypothetical proteinDAH51_17575Not AvailableNegative3710820 - 371155426472.5
hypothetical proteinDAH51_17580Not AvailableNegative3711759 - 37119627387.94
hypothetical proteinDAH51_17595Not AvailableNegative3712401 - 371269410652.8
fic family proteinDAH51_17600Not AvailablePositive3712798 - 371402145104.7

Displaying genes 3511 – 3520 of 5462 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0005202(S)-4-hydroxy-2-oxopentanoateC5H7O4Chemical structure of (S)-4-hydroxy-2-oxopentanoateNot available
Average131.108Da
Monoisotopic131.034982285Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.