Sphingobium yanoikuyae

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Sphingomonadales

Family

Sphingobiaceae

Genus

Sphingobium

Description

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderSphingomonadales
FamilySphingobiaceae
GenusSphingobium
SpeciesSphingobium yanoikuyae
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Sphingobium yanoikuyae strain SK-NIH.Env6_1116 NODE_126, whole

Gene Summary

Adenine Count

1044020 bp

Thymine Count

1039951 bp

Guanine Count

1862718 bp

Cytosine Count

1875819 bp

Genome Length

5822508 bp

Protein-coding Genes

5290 genes

Non-Coding Genes

172 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
cell wall hydrolaseDAH51_04385Not AvailableNegative957714 - 95909949242.2
cysteine synthase aDAH51_04390Not AvailableNegative959119 - 96003632375.0
mfs transporterDAH51_04395Not AvailableNegative960033 - 96133745851.7
duf853 family proteinDAH51_04400Not AvailableNegative961423 - 96305457747.8
do family serine endopeptidaseDAH51_04405Not AvailableNegative963172 - 96468051732.5
protease modulator hflcDAH51_04410Not AvailableNegative964809 - 96564831400.0
ftsh protease activity modulator hflkDAH51_04415Not AvailableNegative965645 - 96675439287.3
chromosome partitioning protein paraDAH51_04420Not AvailablePositive966849 - 96781433323.5
n-acetyltransferaseDAH51_04425Not AvailableNegative967815 - 96827316341.5
hypothetical proteinDAH51_04430Not AvailableNegative968323 - 96900023438.9

Displaying genes 1061 – 1070 of 5462 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0005202(S)-4-hydroxy-2-oxopentanoateC5H7O4Chemical structure of (S)-4-hydroxy-2-oxopentanoateNot available
Average131.108Da
Monoisotopic131.034982285Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

No health effects information available for this bacterium.