Pimelobacter simplex

Rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Pimelobacter

Description

Pimelobacter simplex is a Gram-positive, rod-shaped bacterium that is nonsporulating and exhibits an aerobic metabolism. This microbe has been identified in a variety of environments, including deteriorated mural paintings, oil-contaminated soil, oil-contaminated sea sediment, and the rhizosphere and roots of pine trees. Its presence in these diverse habitats suggests a notable adaptability to different ecological niches, particularly those affected by organic contamination. The isolation of Pimelobacter simplex from oil-contaminated environments indicates a potential role in the degradation of hydrocarbons, which may contribute to bioremediation efforts in polluted sites. Furthermore, its association with the rhizosphere of pine trees highlights its possible involvement in plant-microbe interactions, potentially influencing nutrient cycling or soil health. This dual capacity to thrive in both contaminated and natural environments underscores the ecological versatility of Pimelobacter simplex, making it an interesting subject for further study in microbial ecology and environmental microbiology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusPimelobacter
SpeciesPimelobacter simplex
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdeteriorated mural paintings; oil contaminated soil; oil-contaminated sea sediment; pine tree rhizosphere; pine tree roots; soil
Biotic relationshipNot Available
Host(s)Homo sapiens, Triticum aestivum, Solanum lycopersicum
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pimelobacter simplex strain ATCC 6946 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5428 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
iron complex transport system atp-binding proteinSAMN05421671_5137Not AvailableNegative5104375 - 510515727886.7
iron complex transport system permease proteinSAMN05421671_5138Not AvailableNegative5105154 - 510617934733.0
iron complex transport system permease proteinSAMN05421671_5139Not AvailableNegative5106176 - 510716533460.9
nadph-dependent ferric siderophore reductase, contains fad-binding and sip domainsSAMN05421671_5140Not AvailableNegative5107162 - 510804932508.1
iron complex transport system substrate-binding proteinSAMN05421671_5141Not AvailableNegative5108046 - 510914640392.7
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN05421671_5142Not AvailablePositive5109247 - 511000826052.0
alkylhydroperoxidase ahpd family core domain-containing proteinSAMN05421671_5143Not AvailableNegative5110015 - 511046416116.2
hypothetical proteinSAMN05421671_5144Not AvailableNegative5110461 - 511077211408.3
catalase-peroxidaseSAMN05421671_5145Not AvailableNegative5110900 - 511311079965.9
fur family transcriptional regulator, ferric uptake regulatorSAMN05421671_5146Not AvailableNegative5113128 - 511356515607.5

Displaying genes 5081 – 5090 of 5564 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm00174922-MaleylacetateC6H6O5Chemical structure of 2-Maleylacetate24740-88-3
Average158.1088Da
Monoisotopic158.021523302Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0040654Streptomyces bungoensisNot availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

Health ConditionRelationReference
PyonephrosisCausesPMC11729731
Psoas abscessCausesPMC11729731

Displaying health effects 1 – 2 of 2 in total