Pimelobacter simplex

Rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Pimelobacter

Description

Pimelobacter simplex is a Gram-positive, rod-shaped bacterium that is nonsporulating and exhibits an aerobic metabolism. This microbe has been identified in a variety of environments, including deteriorated mural paintings, oil-contaminated soil, oil-contaminated sea sediment, and the rhizosphere and roots of pine trees. Its presence in these diverse habitats suggests a notable adaptability to different ecological niches, particularly those affected by organic contamination. The isolation of Pimelobacter simplex from oil-contaminated environments indicates a potential role in the degradation of hydrocarbons, which may contribute to bioremediation efforts in polluted sites. Furthermore, its association with the rhizosphere of pine trees highlights its possible involvement in plant-microbe interactions, potentially influencing nutrient cycling or soil health. This dual capacity to thrive in both contaminated and natural environments underscores the ecological versatility of Pimelobacter simplex, making it an interesting subject for further study in microbial ecology and environmental microbiology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusPimelobacter
SpeciesPimelobacter simplex
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdeteriorated mural paintings; oil contaminated soil; oil-contaminated sea sediment; pine tree rhizosphere; pine tree roots; soil
Biotic relationshipNot Available
Host(s)Homo sapiens, Triticum aestivum, Solanum lycopersicum
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pimelobacter simplex strain ATCC 6946 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5428 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
benzoate/toluate 1,2-dioxygenase alpha subunitSAMN05421671_0348Not AvailablePositive299384 - 30072750625.5
3-phenylpropionate/cinnamic acid dioxygenase, small subunitSAMN05421671_0349Not AvailablePositive300724 - 30124819984.4
glyoxalase/bleomycin resistance protein/dioxygenase superfamily proteinSAMN05421671_0350Not AvailablePositive301261 - 30246946265.4
acetylornithine deacetylase/succinyl-diaminopimelate desuccinylaseSAMN05421671_0351Not AvailablePositive302433 - 30367743251.3
hypothetical proteinSAMN05421671_0352Not AvailablePositive303703 - 3038224190.16
dihydropyrimidinaseSAMN05421671_0353Not AvailablePositive304037 - 30544350440.2
ureidoacrylate peracid hydrolaseSAMN05421671_0354Not AvailablePositive305433 - 30606823508.0
carbon-monoxide dehydrogenase small subunit/xanthine dehydrogenase yagt iron-sulfur-binding subunitSAMN05421671_0355Not AvailablePositive306142 - 30667818227.7
co or xanthine dehydrogenase, mo-binding subunitSAMN05421671_0356Not AvailablePositive306675 - 310034119290.0
sulfopyruvate decarboxylase, tpp-binding subunit (coenzyme m biosynthesis)SAMN05421671_0357Not AvailablePositive310027 - 31055118197.9

Displaying genes 461 – 470 of 5564 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm00174922-MaleylacetateC6H6O5Chemical structure of 2-Maleylacetate24740-88-3
Average158.1088Da
Monoisotopic158.021523302Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0040654Streptomyces bungoensisNot availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

Health ConditionRelationReference
PyonephrosisCausesPMC11729731
Psoas abscessCausesPMC11729731

Displaying health effects 1 – 2 of 2 in total