Pimelobacter simplex

Rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Pimelobacter

Description

Pimelobacter simplex is a Gram-positive, rod-shaped bacterium that is nonsporulating and exhibits an aerobic metabolism. This microbe has been identified in a variety of environments, including deteriorated mural paintings, oil-contaminated soil, oil-contaminated sea sediment, and the rhizosphere and roots of pine trees. Its presence in these diverse habitats suggests a notable adaptability to different ecological niches, particularly those affected by organic contamination. The isolation of Pimelobacter simplex from oil-contaminated environments indicates a potential role in the degradation of hydrocarbons, which may contribute to bioremediation efforts in polluted sites. Furthermore, its association with the rhizosphere of pine trees highlights its possible involvement in plant-microbe interactions, potentially influencing nutrient cycling or soil health. This dual capacity to thrive in both contaminated and natural environments underscores the ecological versatility of Pimelobacter simplex, making it an interesting subject for further study in microbial ecology and environmental microbiology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusPimelobacter
SpeciesPimelobacter simplex
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdeteriorated mural paintings; oil contaminated soil; oil-contaminated sea sediment; pine tree rhizosphere; pine tree roots; soil
Biotic relationshipNot Available
Host(s)Homo sapiens, Triticum aestivum, Solanum lycopersicum
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pimelobacter simplex strain ATCC 6946 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5428 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-binding transcriptional regulator, lrp familySAMN05421671_0287Not AvailablePositive241292 - 24174116583.1
gntr family transcriptional regulatorSAMN05421671_0288Not AvailablePositive241928 - 24264726110.9
cytosine deaminaseSAMN05421671_0289Not AvailableNegative242678 - 24392545022.7
putative redox proteinSAMN05421671_0290Not AvailableNegative243922 - 24444918684.2
amino acid/amide abc transporter substrate-binding protein, haat familySAMN05421671_0291Not AvailablePositive244854 - 24604440956.4
amino acid/amide abc transporter membrane protein 1, haat familySAMN05421671_0292Not AvailablePositive246120 - 24697729748.5
branched-chain amino acid transport system permease proteinSAMN05421671_0293Not AvailablePositive246981 - 24883765326.3
branched-chain amino acid transport system atp-binding proteinSAMN05421671_0294Not AvailablePositive248834 - 24958327029.8
transcriptional regulator, iclr familySAMN05421671_0295Not AvailableNegative249559 - 25038028803.9
transcriptional regulator, padr familySAMN05421671_0296Not AvailableNegative250377 - 25103324952.2

Displaying genes 401 – 410 of 5564 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm00174922-MaleylacetateC6H6O5Chemical structure of 2-Maleylacetate24740-88-3
Average158.1088Da
Monoisotopic158.021523302Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0040654Streptomyces bungoensisNot availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

Health ConditionRelationReference
PyonephrosisCausesPMC11729731
Psoas abscessCausesPMC11729731

Displaying health effects 1 – 2 of 2 in total