Pimelobacter simplex

Rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Pimelobacter

Description

Pimelobacter simplex is a Gram-positive, rod-shaped bacterium that is nonsporulating and exhibits an aerobic metabolism. This microbe has been identified in a variety of environments, including deteriorated mural paintings, oil-contaminated soil, oil-contaminated sea sediment, and the rhizosphere and roots of pine trees. Its presence in these diverse habitats suggests a notable adaptability to different ecological niches, particularly those affected by organic contamination. The isolation of Pimelobacter simplex from oil-contaminated environments indicates a potential role in the degradation of hydrocarbons, which may contribute to bioremediation efforts in polluted sites. Furthermore, its association with the rhizosphere of pine trees highlights its possible involvement in plant-microbe interactions, potentially influencing nutrient cycling or soil health. This dual capacity to thrive in both contaminated and natural environments underscores the ecological versatility of Pimelobacter simplex, making it an interesting subject for further study in microbial ecology and environmental microbiology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusPimelobacter
SpeciesPimelobacter simplex
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdeteriorated mural paintings; oil contaminated soil; oil-contaminated sea sediment; pine tree rhizosphere; pine tree roots; soil
Biotic relationshipNot Available
Host(s)Homo sapiens, Triticum aestivum, Solanum lycopersicum
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pimelobacter simplex strain ATCC 6946 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5428 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sdr family mycofactocin-dependent oxidoreductaseSAMN05421671_2550Not AvailableNegative2547866 - 254873530554.1
lysophospholipase, alpha-beta hydrolase superfamilySAMN05421671_2551Not AvailableNegative2548769 - 254983937085.8
monosaccharide abc transporter membrane protein, cut2 familySAMN05421671_2552Not AvailableNegative2549873 - 255091635478.8
monosaccharide abc transporter atp-binding protein, cut2 familySAMN05421671_2553Not AvailableNegative2550913 - 255246055408.9
ribose transport system substrate-binding proteinSAMN05421671_2554Not AvailableNegative2552504 - 255369140854.8
gamma-glutamyltransferase 2. threonine peptidase. merops family t03SAMN05421671_2555Not AvailablePositive2553818 - 255560262846.9
transcriptional regulator, gntr familySAMN05421671_2556Not AvailablePositive2555686 - 255636024663.0
pimeloyl-acp methyl ester carboxylesteraseSAMN05421671_2557Not AvailableNegative2556357 - 255725332465.4
hypothetical proteinSAMN05421671_2558Not AvailableNegative2557250 - 255766915626.2
4-hydroxy-tetrahydrodipicolinate synthaseSAMN05421671_2559Not AvailablePositive2557735 - 255860129897.2

Displaying genes 2641 – 2650 of 5564 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm00174922-MaleylacetateC6H6O5Chemical structure of 2-Maleylacetate24740-88-3
Average158.1088Da
Monoisotopic158.021523302Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0040654Streptomyces bungoensisNot availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

Health ConditionRelationReference
PyonephrosisCausesPMC11729731
Psoas abscessCausesPMC11729731

Displaying health effects 1 – 2 of 2 in total