Pimelobacter simplex

Rodaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Nocardioidaceae

Genus

Pimelobacter

Description

Pimelobacter simplex is a Gram-positive, rod-shaped bacterium that is nonsporulating and exhibits an aerobic metabolism. This microbe has been identified in a variety of environments, including deteriorated mural paintings, oil-contaminated soil, oil-contaminated sea sediment, and the rhizosphere and roots of pine trees. Its presence in these diverse habitats suggests a notable adaptability to different ecological niches, particularly those affected by organic contamination. The isolation of Pimelobacter simplex from oil-contaminated environments indicates a potential role in the degradation of hydrocarbons, which may contribute to bioremediation efforts in polluted sites. Furthermore, its association with the rhizosphere of pine trees highlights its possible involvement in plant-microbe interactions, potentially influencing nutrient cycling or soil health. This dual capacity to thrive in both contaminated and natural environments underscores the ecological versatility of Pimelobacter simplex, making it an interesting subject for further study in microbial ecology and environmental microbiology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyNocardioidaceae
GenusPimelobacter
SpeciesPimelobacter simplex
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatdeteriorated mural paintings; oil contaminated soil; oil-contaminated sea sediment; pine tree rhizosphere; pine tree roots; soil
Biotic relationshipNot Available
Host(s)Homo sapiens, Triticum aestivum, Solanum lycopersicum
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pimelobacter simplex strain ATCC 6946 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

5428 genes

Non-Coding Genes

136 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
carbon monoxide dehydrogenase subunit gSAMN05421671_1073Not AvailablePositive1042568 - 104326923836.3
hypothetical proteinSAMN05421671_1074Not AvailableNegative1043286 - 104399325651.5
ca-activated chloride channel family proteinSAMN05421671_1075Not AvailableNegative1043990 - 104492532830.8
von willebrand factor type a domain-containing proteinSAMN05421671_1076Not AvailableNegative1044922 - 104597137645.0
hypothetical proteinSAMN05421671_1077Not AvailableNegative1045971 - 104645918121.8
protein of unknown function duf58SAMN05421671_1078Not AvailableNegative1046443 - 104733333153.0
moxr-like atpaseSAMN05421671_1079Not AvailableNegative1047341 - 104840839016.0
uncharacterized membrane protein yckc, rdd familySAMN05421671_1080Not AvailableNegative1048405 - 104921728735.5
uncharacterized membrane protein spoiim, required for sporulationSAMN05421671_1081Not AvailablePositive1049257 - 105026736586.6
uncharacterized conserved protein, duf58 family, contains vwf domainSAMN05421671_1082Not AvailableNegative1050406 - 105174348171.3

Displaying genes 1181 – 1190 of 5564 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

3 records
Metabolite IDMetabolite nameStructureCAS number
BASm00174922-MaleylacetateC6H6O5Chemical structure of 2-Maleylacetate24740-88-3
Average158.1088Da
Monoisotopic158.021523302Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0040654Streptomyces bungoensisNot availableNot availableNot available

Displaying 1–3 of 3 metabolites

Health Effects

Health ConditionRelationReference
PyonephrosisCausesPMC11729731
Psoas abscessCausesPMC11729731

Displaying health effects 1 – 2 of 2 in total