Rhodococcus rhodochrous

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Mycobacteriales

Family

Nocardiaceae

Genus

Nocardia

Description

Rhodococcus rhodochrous is a gram-positive, rod-shaped bacterium that thrives in moderate temperatures, fits into the category of heterotrophs, and is classified as a facultative anaerobe. This versatile microbe is predominantly found in soil and is known for its ability to degrade a wide variety of organic compounds, including pollutants such as aromatic hydrocarbons and various industrial solvents. As a gram-positive organism, R. rhodochrous possesses a thick peptidoglycan layer in its cell wall, which contributes to its staining characteristics and plays a crucial role in its resilience against environmental stresses. Its rod shape allows for efficient nutrient uptake and motility, which is essential in its natural habitat. Being a heterotroph, R. rhodochrous relies on organic carbon sources for growth, demonstrating an impressive metabolic flexibility that allows it to adapt to various ecological niches. As a facultative anaerobe, this bacterium can survive in the presence or absence of oxygen, which enables it to colonize diverse environments, from well-aerated soils to oxygen-poor habitats. Its metabolic versatility allows it to utilize different pathways to generate energy depending on the availability of oxygen, further enhancing its adaptability. Rhodococcus rhodochrous is notable not only for its biodegradation capabilities but also for its potential in bioremediation strategies. Its enzymes can break down complex pollutants, making it a valuable asset in cleaning up contaminated sites. Moreover, this microbe has been recognized for its potential applications in biotechnological processes, including the production of valuable metabolites and bioconversion of organic materials into biofuels, highlighting its importance in environmental and industrial microbiology.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyNocardiaceae
GenusNocardia
SpeciesNocardia farcinica
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Rhodococcus rhodochrous
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatSoil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementFilaments
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Nocardia farcinica strain NCTC630 genome assembly, contig:

Gene Summary

Adenine Count

958302 bp

Thymine Count

958614 bp

Guanine Count

2294641 bp

Cytosine Count

2301579 bp

Genome Length

6513136 bp

Protein-coding Genes

6022 genes

Non-Coding Genes

88 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
lipaseNCTC630_00143Not AvailablePositive165324 - 16640938541.1
uncharacterised proteinNCTC630_00144Not AvailablePositive166447 - 16715125356.1
protein of uncharacterised function (duf3107)NCTC630_00145Not AvailablePositive167257 - 1674847810.35
tetr family transcriptional regulatorNCTC630_00146Not AvailableNegative167556 - 16823625370.1
membrane proteinNCTC630_00147Not AvailablePositive168428 - 16972045639.0
molybdopterin biosynthesis-like protein moezNCTC630_00148Not AvailablePositive169817 - 17100142631.1
uncharacterised proteinNCTC630_00149Not AvailablePositive171125 - 17194930171.2
nitrate/nitrite transporter narkNCTC630_00150Not AvailableNegative172025 - 17350952093.6
gntr family transcriptional regulatorNCTC630_00151Not AvailableNegative173675 - 17434624579.8
mfs transporterNCTC630_00152Not AvailablePositive174412 - 17566242947.0

Displaying genes 171 – 180 of 6110 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

34 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003607(2E)-3-(2,3-dihydroxyphenyl)prop-2-enoateC9H7O4Chemical structure of (2E)-3-(2,3-dihydroxyphenyl)prop-2-enoateNot available
Average179.152Da
Monoisotopic179.034982285Da
BASm0004987(2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoateC6H5O4Chemical structure of (2Z,4E)-2-hydroxy-6-oxohexa-2,4-dienoateNot available
Average141.103Da
Monoisotopic141.0193322Da
BASm0005066(25S)-3-oxocholest-4-en-26-oateC27H41O3Chemical structure of (25S)-3-oxocholest-4-en-26-oateNot available
Average413.623Da
Monoisotopic413.30611876Da
BASm0006988(25S)-3-oxocholest-4-en-26-oyl-CoAC48H72N7O18P3SChemical structure of (25S)-3-oxocholest-4-en-26-oyl-CoANot available
Average1160.12Da
Monoisotopic1159.388934994Da
BASm0011719bisucaberinC18H32N4O6Chemical structure of bisucaberinNot available
Average400.476Da
Monoisotopic400.232184766Da
BASm0014037Fumaric acidC4H4O4Chemical structure of Fumaric acid110-17-8
Average116.0722Da
Monoisotopic116.010958616Da
BASm0014042Oxoglutaric acidC5H6O5Chemical structure of Oxoglutaric acid328-50-7
Average146.0981Da
Monoisotopic146.021523302Da

Displaying 1–10 of 34 metabolites

Health Effects

No health effects information available for this bacterium.