Arachnia propionica

Gram-positiveRodNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Propionibacteriaceae

Genus

Arachnia

Description

Pseudopropionibacterium propionicum is a gram-positive, rod-shaped bacterium classified as a mesophilic heterotroph and is an obligate anaerobe. This microbe thrives in environments devoid of oxygen, predominantly found in various anaerobic habitats, including the human gut and the oral cavity, but it can also be isolated from dairy products and soil. As a gram-positive organism, Pseudopropionibacterium propionicum retains the crystal violet stain used in the Gram staining procedure, appearing purple under a microscope. Its rod-like shape contributes to its ability to form clusters or chains, facilitating its survival in anaerobic conditions. Being mesophilic, it grows optimally at moderate temperatures, generally around 30-37°C, which aligns with the body temperatures found in many mammals, including humans. As a heterotroph, Pseudopropionibacterium propionicum requires organic compounds for growth, primarily utilizing carbohydrates and other organic substrates. This metabolic characteristic enables it to thrive in nutrient-rich environments such as the gastrointestinal tract. Its classification as an obligate anaerobe highlights its inability to survive in the presence of oxygen, as oxygen is toxic to its cellular processes. Pseudopropionibacterium propionicum plays a significant role in the fermentation process, particularly in dairy, as it is involved in the production of propionic acid, a key preservative and flavoring agent in certain cheeses, such as Emmental. Additionally, its presence in the human microbiome contributes to maintaining gut health and balance by participating in the complex interplay of microbial communities. This bacterium's unique metabolic pathways and adaptations to anaerobic environments make it a fascinating subject of study in microbiology and food science.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyPropionibacteriaceae
GenusArachnia
SpeciesArachnia propionica
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Arachnia propionica
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Arachnia propionica strain OH887_COT-365 scaffold_76, whole genome

Gene Summary

Adenine Count

551230 bp

Thymine Count

547715 bp

Guanine Count

1153236 bp

Cytosine Count

1146296 bp

Genome Length

3404168 bp

Protein-coding Genes

3021 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
rok family transcriptional regulatorEII34_10630Not AvailableNegative2290104 - 229143246588.2
branched-chain amino acid aminotransferaseEII34_10635Not AvailablePositive2291400 - 229247639244.3
8-oxo-dgtp diphosphataseEII34_10640Not AvailablePositive2292478 - 229295717729.0
50s ribosomal protein l36EII34_10645Not AvailableNegative2293106 - 22932284690.97
hypothetical proteinEII34_10650Not AvailablePositive2293301 - 229429035419.5
hypothetical proteinEII34_10655Not AvailablePositive2294376 - 229484317314.3
hypothetical proteinEII34_10660Not AvailablePositive2294981 - 229532512114.3
hypothetical proteinEII34_10665Not AvailablePositive2295761 - 229691541264.9
hypothetical proteinEII34_10670Not AvailableNegative2296927 - 229757722177.7
hypothetical proteinEII34_10675Not AvailablePositive2297682 - 22979036731.03

Displaying genes 2151 – 2160 of 6164 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

12 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm0034745glycodeoxycholic acidC26H43NO5Chemical structure of glycodeoxycholic acidNULL
Average449.632Da
Monoisotopic449.314123489Da
BASm0040248[Clostridium] leptum DSM 753Not availableNot availableNot available
BASm0040447Pseudomonas fragiNot availableNot availableNot available
BASm0040476Penicillium echinulatumNot availableNot availableNot available
BASm0040485Lachnoanaerobaculum sp. ICM7Not availableNot availableNot available
BASm0040685Methylobacter tundripaludumNot availableNot availableNot available
BASm0040713Mobiluncus mulierisNot availableNot availableNot available
BASm0040737Leuconostoc lactisNot availableNot availableNot available
BASm0040743Parabacteroides sp.Not availableNot availableNot available

Displaying 1–10 of 12 metabolites

Health Effects

Health ConditionRelationReference
Thoracic actinomycosisCausesPMC6956836
Empyema necessitansCausesPMC6956836
Chronic, granulomatous infectionCausesPMC6956836
ActinomycosisCausesPMC6956836

Displaying health effects 1 – 4 of 4 in total