Arachnia propionica

Gram-positiveRodNon-motileAnaerobic

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Propionibacteriaceae

Genus

Arachnia

Description

Pseudopropionibacterium propionicum is a gram-positive, rod-shaped bacterium classified as a mesophilic heterotroph and is an obligate anaerobe. This microbe thrives in environments devoid of oxygen, predominantly found in various anaerobic habitats, including the human gut and the oral cavity, but it can also be isolated from dairy products and soil. As a gram-positive organism, Pseudopropionibacterium propionicum retains the crystal violet stain used in the Gram staining procedure, appearing purple under a microscope. Its rod-like shape contributes to its ability to form clusters or chains, facilitating its survival in anaerobic conditions. Being mesophilic, it grows optimally at moderate temperatures, generally around 30-37°C, which aligns with the body temperatures found in many mammals, including humans. As a heterotroph, Pseudopropionibacterium propionicum requires organic compounds for growth, primarily utilizing carbohydrates and other organic substrates. This metabolic characteristic enables it to thrive in nutrient-rich environments such as the gastrointestinal tract. Its classification as an obligate anaerobe highlights its inability to survive in the presence of oxygen, as oxygen is toxic to its cellular processes. Pseudopropionibacterium propionicum plays a significant role in the fermentation process, particularly in dairy, as it is involved in the production of propionic acid, a key preservative and flavoring agent in certain cheeses, such as Emmental. Additionally, its presence in the human microbiome contributes to maintaining gut health and balance by participating in the complex interplay of microbial communities. This bacterium's unique metabolic pathways and adaptations to anaerobic environments make it a fascinating subject of study in microbiology and food science.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyPropionibacteriaceae
GenusArachnia
SpeciesArachnia propionica
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranesNot Available
Image of Arachnia propionica
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatMultiple
Biotic relationshipNot Available
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceChemoheterotroph
PathogenicityNot Available

Genome Summary

Arachnia propionica strain OH887_COT-365 scaffold_76, whole genome

Gene Summary

Adenine Count

551230 bp

Thymine Count

547715 bp

Guanine Count

1153236 bp

Cytosine Count

1146296 bp

Genome Length

3404168 bp

Protein-coding Genes

3021 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
paai family thioesteraseEII34_08510Not AvailableNegative1805207 - 180559013206.0
dna polymerase iEII34_08515Not AvailablePositive1805623 - 180829296574.9
class f sortaseEII34_08520Not AvailableNegative1808313 - 180903225545.9
30s ribosomal protein s1EII34_08525Not AvailablePositive1809250 - 181069553090.4
hypothetical proteinEII34_08530Not AvailableNegative1810954 - 181127111134.0
glycine dehydrogenase (aminomethyl-transferring)EII34_08535Not AvailableNegative1811319 - 1814147100997.0
glycine cleavage system protein hEII34_08540Not AvailableNegative1814147 - 181450612984.1
glycine cleavage system aminomethyltransferase gcvtEII34_08545Not AvailableNegative1814522 - 181563740038.0
duf222 domain-containing proteinEII34_08550Not AvailablePositive1816027 - 181708538351.1
helicaseEII34_08555Not AvailableNegative1816989 - 1821653172140.0

Displaying genes 1741 – 1750 of 6164 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

14 records
Metabolite IDMetabolite nameStructureCAS number
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm0034745glycodeoxycholic acidC26H43NO5Chemical structure of glycodeoxycholic acidNULL
Average449.632Da
Monoisotopic449.314123489Da
BASm0039676Clostridium nexileNot availableNot availableNot available
BASm0039735Streptococcus anginosusNot availableNot availableNot available
BASm0040248[Clostridium] leptum DSM 753Not availableNot availableNot available
BASm0040447Pseudomonas fragiNot availableNot availableNot available
BASm0040476Penicillium echinulatumNot availableNot availableNot available
BASm0040485Lachnoanaerobaculum sp. ICM7Not availableNot availableNot available
BASm0040685Methylobacter tundripaludumNot availableNot availableNot available
BASm0040713Mobiluncus mulierisNot availableNot availableNot available

Displaying 1–10 of 14 metabolites

Health Effects

Health ConditionRelationReference
Thoracic actinomycosisCausesPMC6956836
Empyema necessitansCausesPMC6956836
Chronic, granulomatous infectionCausesPMC6956836
ActinomycosisCausesPMC6956836

Displaying health effects 1 – 4 of 4 in total