Propionibacterium freudenreichii

Gram-positiveRodNon-motileFacultative

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Propionibacteriales

Family

Propionibacteriaceae

Genus

Propionibacterium

Description

Propionibacterium freudenreichii is a thermophilic, heterotrophic microbe that thrives in temperatures ranging from 25°C to 40°C, making it a moderate thermophile. As a heterotroph, it obtains its energy by breaking down organic compounds, specifically peptides and proteins, which are its preferred energy source. P. freudenreichii produces energy through fermentation, a process in which it converts glucose into lactic acid, propionic acid, and carbon dioxide. Its metabolism is typically anaerobic, but it can tolerate oxygen in certain concentrations. Gram-staining reveals P. freudenreichii to be a Gram-positive microbe, characterized by a thick peptidoglycan layer in its cell wall. It is typically rod-shaped, with a width of 0.5-1.0 μm and a length of 2.5-5.0 μm. This microbe can be found in various body sites, including the human gut, skin, and oral cavity, as well as in environmental sources like soil, water, and dairy products. P. freudenreichii is an aerotolerant anaerobe, meaning it can survive in the presence of oxygen but does not require it for growth. In fact, it exhibits optimal growth in oxygen-deprived environments, such as those found in the gut or other anaerobic niches. Propionibacterium freudenreichii has been extensively studied for its role in the production of Swiss cheese, where it is responsible for the characteristic "eyes" or holes that develop on the surface of the cheese during fermentation. This process is facilitated by the microbe's capacity to convert citrate into propionic acid, which creates the acidic environment necessary for the formation of these unique features. Moreover, recent research has highlights P. freudenreichii's potential as a probiotic, with studies suggesting it may have beneficial effects on human health, including the modulation of the immune system and the regulation of gut microbiota. Its ability to survive in a variety of environments and its adaptability to different conditions have made it a valuable model organism for studying the evolution of microorganisms and their interactions with their environments.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPropionibacteriales
FamilyPropionibacteriaceae
GenusPropionibacterium
SpeciesPropionibacterium freudenreichii
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Propionibacterium freudenreichii
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

423605 bp

Thymine Count

419830 bp

Guanine Count

865854 bp

Cytosine Count

869760 bp

Genome Length

2580419 bp

Protein-coding Genes

964 genes

Non-Coding Genes

47 genes

# of Chromosomes/Plasmids

15

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative ribose 5-phosphate isomerasePFR_JS13-2_113Not AvailablePositive140888 - 14137617178.3
putative membrane proteinPFR_JS13-2_114Not AvailablePositive141855 - 14293437837.1
had-superfamily hydrolase, subfamily iiaPFR_JS13-2_115Not AvailablePositive142994 - 14386632350.4
fggy-family pentulose kinasePFR_JS13-2_116Not AvailablePositive143898 - 14547256543.8
arabinose operon protein aramPFR_JS13-2_117Not AvailablePositive145485 - 14686149722.2
ribulokinasePFR_JS13-2_118Not AvailablePositive147099 - 14884761926.6
transketolasePFR_JS13-2_119Not AvailablePositive148966 - 15103274075.0
chy zinc fingerPFR_JS13-2_120Not AvailableNegative151313 - 15162411333.3
putative excinuclease abc, a subunitPFR_JS13-2_121Not AvailablePositive151801 - 15408382653.2
aldose 1-epimerase family proteinPFR_JS13-2_122Not AvailableNegative154159 - 15505532218.9

Displaying genes 571 – 580 of 29420 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

49 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000515mycothioneC34H58N4O24S2Chemical structure of mycothioneNot available
Average970.96Da
Monoisotopic970.2882411Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001086scyllo-inososeC6H10O6Chemical structure of scyllo-inososeNot available
Average178.14Da
Monoisotopic178.0477381Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm00015513D-3,5/4-trihydroxycyclohexane-1,2-dioneC6H8O5Chemical structure of 3D-3,5/4-trihydroxycyclohexane-1,2-dioneNot available
Average160.125Da
Monoisotopic160.0371734Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da

Displaying 1–10 of 49 metabolites

Health Effects

No health effects information available for this bacterium.