Eubacterium barkeri

Gram-positiveanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Eubacteriaceae

Genus

Eubacterium

Description

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyEubacteriaceae
GenusEubacterium
SpeciesEubacterium barkeri
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Eubacterium barkeri strain VPI 5359 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2492 genes

Non-Coding Genes

340 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed/haloacid dehalogenase superfamily, subfamily ia, variant 1 with third motif having dx(3-4)d or dx(3-4)eSAMN04488579_102156Not AvailablePositive414459 - 41510623772.4
ribonucleoside-diphosphate reductase class iiSAMN04488579_102157Not AvailablePositive415250 - 418195109012.0
gntr family transcriptional regulator / mocr family aminotransferaseSAMN04488579_102158Not AvailablePositive418478 - 41991454404.3
predicted dna-binding protein, upf0251 familySAMN04488579_102159Not AvailablePositive419935 - 42035415549.3
predicted fe-mo cluster-binding protein, nifx familySAMN04488579_102160Not AvailablePositive420354 - 42074913532.7
transcriptional regulator, deor familySAMN04488579_102161Not AvailableNegative421103 - 42188829049.1
l-ribulokinaseSAMN04488579_102162Not AvailablePositive422120 - 42379361145.0
glycerol-1-phosphate dehydrogenaseSAMN04488579_102163Not AvailablePositive423827 - 42521250646.9
aminotransferase class-iiiSAMN04488579_102164Not AvailableNegative425307 - 42644042586.5
hybrid cluster protein-associated redox disulfide domain-containing proteinSAMN04488579_102165Not AvailableNegative426524 - 4267367538.02

Displaying genes 511 – 520 of 2832 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

7 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0017271NADC21H28N7O14P2Chemical structure of NAD53-84-9
Average664.433Da
Monoisotopic664.116946663Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039775Eubacterium barkeriNot availableNot availableNot available
BASm0040037Clostridium sticklandii DSM 519Not availableNot availableNot available

Displaying 1–7 of 7 metabolites

Health Effects

No health effects information available for this bacterium.