Eubacterium barkeri

Gram-positiveanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Eubacteriaceae

Genus

Eubacterium

Description

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyEubacteriaceae
GenusEubacterium
SpeciesEubacterium barkeri
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Eubacterium barkeri strain VPI 5359 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2492 genes

Non-Coding Genes

340 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dtdp-4-dehydrorhamnose reductaseSAMN04488579_13122Not AvailableNegative2815045 - 281591433356.8
pts system, fructose-specific iib-like componentSAMN04488579_13123Not AvailableNegative2815917 - 281623411414.1
pts system unknown substrate iic component, fru familySAMN04488579_13124Not AvailableNegative2816245 - 281732736996.1
pts system iia component, fru familySAMN04488579_13125Not AvailableNegative2817339 - 281778216707.1
l-fucose mutarotaseSAMN04488579_13126Not AvailablePositive2818030 - 281846716152.9
gntr family transcriptional regulatorSAMN04488579_13127Not AvailableNegative2818641 - 281939028833.8
ribulokinaseSAMN04488579_13128Not AvailableNegative2819441 - 282095255759.8
galactitol 1-phosphate 5-dehydrogenaseSAMN04488579_13129Not AvailableNegative2820970 - 282202538821.3
deoxyribose-phosphate aldolaseSAMN04488579_13130Not AvailableNegative2822022 - 282270825003.9
transposase dde domain-containing proteinSAMN04488579_13131Not AvailableNegative2822900 - 282318210818.3

Displaying genes 2691 – 2700 of 2832 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

7 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0017271NADC21H28N7O14P2Chemical structure of NAD53-84-9
Average664.433Da
Monoisotopic664.116946663Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039775Eubacterium barkeriNot availableNot availableNot available
BASm0040037Clostridium sticklandii DSM 519Not availableNot availableNot available

Displaying 1–7 of 7 metabolites

Health Effects

No health effects information available for this bacterium.