Eubacterium barkeri

Gram-positiveanaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Eubacteriaceae

Genus

Eubacterium

Description

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyEubacteriaceae
GenusEubacterium
SpeciesEubacterium barkeri
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
Habitatsoil
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Eubacterium barkeri strain VPI 5359 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

2492 genes

Non-Coding Genes

340 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
pts system n-acetylgalactosamine-specific eiid component, man familySAMN04488579_1296Not AvailableNegative2736600 - 273743930496.2
pts system, n-acetylgalactosamine-specific iic componentSAMN04488579_1297Not AvailableNegative2737429 - 273822027667.7
pts system, n-acetylgalactosamine-specific iib componentSAMN04488579_1298Not AvailableNegative2738241 - 273871717376.4
n-acetylglucosamine 6-phosphate deacetylaseSAMN04488579_1299Not AvailablePositive2738954 - 274008740012.2
carboxypeptidase pm20d1SAMN04488579_12910Not AvailableNegative2740084 - 274152652939.2
hypothetical proteinSAMN04488579_12911Not AvailableNegative2741526 - 274218823275.4
protein of unknown functionSAMN04488579_12912Not AvailableNegative2742192 - 274291726151.3
l-threonine ammonia-lyaseSAMN04488579_12913Not AvailablePositive2743095 - 274433344649.9
nucleobase:cation symporter-2, ncs2 familySAMN04488579_12914Not AvailablePositive2744780 - 274616248335.2
xanthine dehydrogenase molybdenum-binding subunitSAMN04488579_12916Not AvailablePositive2746440 - 274874084026.9

Displaying genes 2621 – 2630 of 2832 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

7 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000908propanoateC3H5O2Chemical structure of propanoateNot available
Average73.072Da
Monoisotopic73.029502981Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0017271NADC21H28N7O14P2Chemical structure of NAD53-84-9
Average664.433Da
Monoisotopic664.116946663Da
BASm0039655Achromobacter xylosoxidans A8Not availableNot availableNot available
BASm0039775Eubacterium barkeriNot availableNot availableNot available
BASm0040037Clostridium sticklandii DSM 519Not availableNot availableNot available

Displaying 1–7 of 7 metabolites

Health Effects

No health effects information available for this bacterium.