Clostridium beijerinckii

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium beijerinckii is a gram-positive, rod-shaped microbe that thrives in mesophilic temperatures, categorizing it as a chemoheterotroph, and can be found in various body sites, including the gastrointestinal tract, soil, and sewage, across all possible species. As an obligate anaerobe, it necessitates a strict absence of oxygen to grow and survive. The gram-positive characteristic is attributed to the presence of a thick peptidoglycan layer in its cell wall, which retains the crystal violet stain during the gram staining procedure. Its rod shape allows for efficient movement and colonization in its environment. As a chemoheterotroph, Clostridium beijerinckii relies on organic compounds for energy and carbon sources, breaking down complex molecules into simpler ones to sustain its metabolic processes. The mesophilic temperature preference indicates that it grows optimally in moderate temperatures, typically between 20-45°C. Its ability to inhabit various body sites and environments is a testament to its adaptability and resilience. In terms of oxygen tolerance, its classification as an obligate anaerobe means that it is incapable of surviving in the presence of oxygen, making it well-suited to environments with low or no oxygen levels. Clostridium beijerinckii has been utilized in the production of butanol, a biofuel, through fermentation processes, highlighting its potential in industrial applications and contributing to the development of sustainable energy solutions.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium beijerinckii
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridium beijerinckii
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatFresh water - Soil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Clostridium beijerinckii isolate C. beijerinckii DSM 6423 plasmid

Gene Summary

Adenine Count

6798 bp

Thymine Count

5205 bp

Guanine Count

2716 bp

Cytosine Count

2043 bp

Genome Length

16762 bp

Protein-coding Genes

7 genes

Non-Coding Genes

12 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
duf4362 domain-containing proteinCIBE_RS28490Not AvailableNegative2868 - 360828369.3
matrixin family metalloproteaseCIBE_RS28495Not AvailableNegative3777 - 501545502.2
peptidoglycan-binding domain-containing proteinCIBE_RS28500Not AvailablePositive5309 - 571914761.5
recombinase family proteinCIBE_RS28505Not AvailableNegative5804 - 640022247.6
hypothetical proteinCIBE_RS28510Not AvailableNegative6583 - 688812026.5
relaxase/mobilization nuclease domain-containing proteinCIBE_RS28515Not AvailableNegative6845 - 796943672.1
plasmid mobilization proteinCIBE_RS28520Not AvailableNegative7969 - 829212702.7
hypothetical proteinCIBE_RS28525Not AvailableNegative8282 - 85068509.93
duf6442 family proteinCIBE_RS28530Not AvailableNegative8797 - 909911826.7
hypothetical proteinCIBE_RS28535Not AvailableNegative9140 - 1011734937.1

Displaying genes 51 – 60 of 60 in total

Metabolites

19 records
Metabolite IDMetabolite nameStructureCAS number
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0014029(S)-3-Hydroxyisobutyric acidC19H35N5O6SeChemical structure of (S)-3-Hydroxyisobutyric acid26543-05-5
Average508.489Da
Monoisotopic509.175256Da
BASm0014031Butyric acidC4H8O2Chemical structure of Butyric acid107-92-6
Average88.1051Da
Monoisotopic88.0524295Da
BASm0014032Acetic acidC2H4O2Chemical structure of Acetic acid64-19-7
Average60.052Da
Monoisotopic60.021129372Da
BASm0014033AmmoniaH3NChemical structure of Ammonia7664-41-7
Average17.0305Da
Monoisotopic17.026549101Da
BASm0014072PectinC6H10O7Chemical structure of Pectin9000-69-5
Average194.1394Da
Monoisotopic194.042652674Da
BASm0014079FuranC4H4OChemical structure of Furan110-00-9
Average68.074Da
Monoisotopic68.02621475Da
BASm0014087DextrinC18H32O16Chemical structure of Dextrin9004-53-9
Average504.4371Da
Monoisotopic504.169034976Da
BASm0014994Clostrubin AC25H18O6Chemical structure of Clostrubin ANULL
Average414.413Da
Monoisotopic414.1103383Da
BASm0017032ClostrindolinC14H11NO3Chemical structure of ClostrindolinNULL
Average241.246Da
Monoisotopic241.073893218Da

Displaying 1–10 of 19 metabolites

Health Effects

No health effects information available for this bacterium.