Clostridium beijerinckii str. NCIMB 14988

Gram-positiveRodMotileAnaerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Eubacteriales

Family

Clostridiaceae

Genus

Clostridium

Description

Clostridium beijerinckii str. NCIMB 14988 is a Gram-positive, rod-shaped bacterium that typically occurs in pairs or as single cells. This microorganism is classified as a chemoorganotroph, utilizing organic compounds as its energy source. C. beijerinckii str. NCIMB 14988 thrives in anaerobic environments, which aligns with its strict requirement for the absence of oxygen. Its natural habitats include freshwater systems and soil, where it can contribute to the nutrient cycling processes. The anaerobic nature of C. beijerinckii str. NCIMB 14988 allows it to play a significant role in the degradation of organic matter, particularly in environments rich in decaying plant material. This metabolic capability may enhance soil fertility and influence the microbial community structure within its habitats. Furthermore, the bacterium’s ability to survive in pairs or as single entities may confer advantages in its interactions with other microorganisms, potentially facilitating cooperative metabolic activities or competition for resources in its ecological niche. Understanding the traits and behaviors of this strain can provide insights into its functional contributions to microbial ecosystems, particularly in anaerobic conditions where organic material is abundant.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium beijerinckii
StrainNCIMB 14988

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Clostridium beijerinckii str. NCIMB 14988
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatFresh water - Soil
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementPairs - Singles
SporulationNot Available
Energy sourceChemoorganotroph
PathogenicityNot Available

Genome Summary

Clostridium beijerinckii strain NCIMB 14988 chromosome, complete

Gene Summary

Adenine Count

2285740 bp

Thymine Count

2253892 bp

Guanine Count

982364 bp

Cytosine Count

963398 bp

Genome Length

6485394 bp

Protein-coding Genes

5649 genes

Non-Coding Genes

176 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
helix-turn-helix domain-containing proteinLF65_RS27820Not AvailablePositive6373771 - 637446626911.1
site-specific integraseLF65_RS27825Not AvailablePositive6374512 - 637568445488.0
Trna-argNot AvailableNot AvailablePositive6375810 - 6375884Not Available
had-ic family p-type atpaseLF65_RS27835A0R3Y2Negative6376188 - 637857887528.5
1-acyl-sn-glycerol-3-phosphate acyltransferaseLF65_RS27840P75479Positive6378809 - 637953127049.5
dead/deah box helicaseLF65_RS27845Q5L3G9Positive6379755 - 638133258427.0
hsp20/alpha crystallin family proteinLF65_RS27850Not AvailableNegative6381465 - 638197719794.2
sigma-54-dependent transcriptional regulatorLF65_RS27855P23914Positive6382248 - 638437479825.0
hdig domain-containing metalloproteinLF65_RS27860Not AvailableNegative6384868 - 638550024892.9
p-ii family nitrogen regulatorLF65_RS27865O66513Negative6385755 - 638609312444.1

Displaying genes 5721 – 5730 of 5825 in total

Metabolites

204 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm0000238(R)-3-phenyllactateC9H9O3Chemical structure of (R)-3-phenyllactateNot available
Average165.169Da
Monoisotopic165.05571773Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000277keto-L-sorboseC6H12O6Chemical structure of keto-L-sorboseNot available
Average180.1559Da
Monoisotopic180.0633881Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00006985-dehydro-2-deoxy-D-gluconateC6H9O6Chemical structure of 5-dehydro-2-deoxy-D-gluconateNot available
Average177.133Da
Monoisotopic177.04046159Da

Displaying 1–10 of 204 metabolites

Health Effects

No health effects information available for this bacterium.