Kingdom
Bacillati
Phylum
Bacillota
Class
Clostridia
Order
Peptostreptococcales
Family
Peptostreptococcaceae
Genus
Clostridioides
Description
Taxonomy
| Kingdom | Bacillati |
|---|---|
| Phylum | Bacillota |
| Class | Clostridia |
| Order | Peptostreptococcales |
| Family | Peptostreptococcaceae |
| Genus | Clostridioides |
| Species | Clostridioides difficile |
| Strain | RA09_70 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Positive |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Yes |
| Number of membranes | 1 |

AI-generated image based on bacteria physiology
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens, Gallus gallus, Metazoa |
| Cell arrangement | Chains - Pairs - Singles |
| Sporulation | Not Available |
| Energy source | Chemoorganotroph |
| Pathogenicity | Human |
Gene Summary
Adenine Count
1519866 bp
Thymine Count
1506247 bp
Guanine Count
608909 bp
Cytosine Count
597184 bp
Genome Length
4232226 bp
Protein-coding Genes
3643 genes
Non-Coding Genes
111 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| abc transporter permease | IM33_12250 | O34741 | Positive | 2523298 - 2525325 | 76347.6 |
| histidine kinase | IM33_12255 | Not Available | Positive | 2525483 - 2527066 | 60351.9 |
| luxr family transcriptional regulator | IM33_12260 | P54662 | Positive | 2527038 - 2527658 | 23578.8 |
| hypothetical protein | IM33_12265 | Not Available | Negative | 2527860 - 2528786 | 36140.8 |
| arac family transcriptional regulator | IM33_12270 | Not Available | Positive | 2529336 - 2530256 | 36010.8 |
| excinuclease abc subunit a | IM33_12275 | Q9WYV0 | Positive | 2530341 - 2532761 | 89031.6 |
| 6-aminohexanoate hydrolase | IM33_12280 | Not Available | Positive | 2532761 - 2533783 | 38679.8 |
| merr family transcriptional regulator | IM33_12285 | Not Available | Positive | 2533879 - 2534625 | 28617.5 |
| major facilitator transporter | IM33_12290 | Q5XBB2 | Positive | 2534711 - 2535961 | 46233.4 |
| abc transporter permease | IM33_12295 | Not Available | Negative | 2536283 - 2537296 | 37629.9 |
Pathways
1 pathway
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Severe diarrhea | Causes | PMC10881109 |
| Colitis | Causes | PMC12366080 |
| Colitis | Causes | PMC5288394 |
| Diarrhea | Causes | PMC10169446 |
| Persistent infection | Causes | PMC11306097 |
| Cdi | Causes | PMC11354687 |
| Healthcare-associated colitis | Causes | PMC11355982 |
| Pseudomembranous colitis | Causes | PMC11355982 |
| Toxic megacolon | Causes | PMC11355982 |
| Enterocolitis | Causes | PMC11355982 |
