Bacillus pumilus

Gram-positiveRodMotileAerobe

Kingdom

Bacillati

Phylum

Bacillota

Class

Bacilli

Order

Caryophanales

Family

Bacillaceae

Genus

Bacillus

Description

Bacillus pumilus is a Gram-positive, rod-shaped bacterium that thrives in a temperature range of mesophilic to thermophilic, with a preference for temperatures between 20-50°C. Its metabolism is categorized as chemoheterotroph, meaning it uses organic compounds as its energy source and requires oxygen for energy production. Specifically, it employs aerobic respiration to generate energy, breaking down complex organic molecules to produce ATP. The shape of B. pumilus is rod-like, with a length of approximately 1-5μm and a width of 0.5-1μm. Gram staining reveals the presence of a thick peptidoglycan layer, characteristic of Gram-positive bacteria. This microbe can be found in various body sites across all species, including soil, water, and the human gut. B. pumilus is an obligate aerobe, requiring oxygen for survival and growth. In its natural environment, it likely utilizes oxygen to facilitate cellular respiration, as it is unable to survive in anaerobic conditions. As a member of the Bacillus genus, B. pumilus has been linked to various ecological roles, including soil remediation and the production of antibiotics. Its ability to degrade pollutants and produce bioactive compounds makes it a valuable target for biological research and biotechnological applications. Additionally, B. pumilus has been used as a model organism for space research, having been sent to space as part of the NASA's Spaceflight Radiation Effects Laboratory. The microbe's ability to withstand extreme environments, including radiation and temperatures, has made it an attractive subject for studying the effects of space travel on microbial life.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassBacilli
OrderCaryophanales
FamilyBacillaceae
GenusBacillus
SpeciesBacillus pumilus
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes1
Image of Bacillus pumilus
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Homo sapiens, Metazoa, Viridiplantae
Cell arrangementNot Available
SporulationSporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Bacillus pumilus strain 145 chromosome, complete genome.

Gene Summary

Adenine Count

1151799 bp

Thymine Count

1164824 bp

Guanine Count

807169 bp

Cytosine Count

813607 bp

Genome Length

3937399 bp

Protein-coding Genes

3706 genes

Non-Coding Genes

383 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Tmp repeat proteinC5695_RS13890Not AvailableNegative2690949 - 2693768101916.0
Hypothetical proteinC5695_RS13895Not AvailableNegative2694006 - 269435013278.0
Major tail proteinC5695_RS13900Not AvailableNegative2694350 - 269495221979.5
AminopeptidaseC5695_RS13905Not AvailableNegative2694953 - 269528212574.0
Hypothetical proteinC5695_RS13910Not AvailableNegative2695279 - 269563513157.6
Head-tail adaptorC5695_RS13915Not AvailableNegative2695632 - 269593111771.0
Dna packaging proteinC5695_RS13920Not AvailableNegative2695921 - 269619610261.1
hypothetical proteinC5695_RS13925Not AvailableNegative2696189 - 269644910116.9
Major capsid proteinC5695_RS13930Not AvailableNegative2696478 - 269773446332.5
Atp-dependent clp proteaseC5695_RS13935Not AvailableNegative2697755 - 269843525403.9

Displaying genes 251 – 260 of 4089 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

42 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000719chloramphenicol 3-acetateC13H14Cl2N2O6Chemical structure of chloramphenicol 3-acetateNot available
Average365.16Da
Monoisotopic364.0228916Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0003526gibberellin A20C19H23O5Chemical structure of gibberellin A20Not available
Average331.389Da
Monoisotopic331.1550974Da
BASm0014487Lipoamide CC17H32N2O4Chemical structure of Lipoamide CNULL
Average328.453Da
Monoisotopic328.236207518Da
BASm0014581Pumilacidin BC53H93N7O13Chemical structure of Pumilacidin BNULL
Average1036.363Da
Monoisotopic1035.683136083Da
BASm0014712(+)-ethyl homononactateC13H24O4Chemical structure of (+)-ethyl homononactateNULL
Average244.331Da
Monoisotopic244.167459253Da
BASm0014744Lipoamide AC15H28N2O4Chemical structure of Lipoamide ANULL
Average300.399Da
Monoisotopic300.20490739Da
BASm0014968Homononactyl homononactateC22H38O7Chemical structure of Homononactyl homononactateNULL
Average414.539Da
Monoisotopic414.261753564Da
BASm00153993-amino-3-deoxy-D-glucoseC6H13NO5Chemical structure of 3-amino-3-deoxy-D-glucoseNULL
Average179.172Da
Monoisotopic179.079372523Da

Displaying 1–10 of 42 metabolites

Health Effects

Health ConditionRelationReference
Food poisoningCausesPMC6402940
Food poisoningCausesPMC9658697
Plant pathogensCausesPMC12287039

Displaying health effects 1 – 3 of 3 in total